The HCS Tools of the Max Planck Institute of Molecular Cell Biology and Genetics include readers for various microscopes, quality controls metrics, all common plate normalization methods, a very powerful plate heatmap viewer, library annotation tools, as well as barcode and plate layout utilities. Together with a rich set of R templates for visualization and modeling, these tools provide a powerful solution for mining screening data that is easy to use, but flexible enough to cope with various types of assays.
Please visit this site for installation instructions.
More details and documentation can be found in the Wiki on github, from where we also provide the source code of the nodes.
News
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2012-03-29 |
IMPORTANT: last update introduced a major bug. Please update (from tomorrow on)! |
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2012-03-22 |
updates in the nightly build:
- new node for Binning Analysis
- bugfix in Bscore normalization (normalized values were not correct)
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2012-02-24 |
Our workshop at the KNIME User Group Meeting 2012 showed that people are interested in the MPI extensions 'HCS-Tools' and 'Scripting Integrations'. The following links provide the tutorial material and example workflows:
http://idisk-srv1.mpi-cbg.de/knime/UGM_2012/
Feel free to send us questions, problem, feedback, ...
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2011-12-12 |
New implemention of 'Range Filter' and 'Range Splitter' with changed configuration settings and support for integer columns |